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Publikacje

październik 12, 2006 :: pawel

Artykuły:

  1. Daniluk, P. Klasyfikacja strukturalna bialek na podstawie analizy ich klas podobienstwa. Praca magisterska, Uniwersytet Warszawski, 2003. (PDF)
  2. Kryshtafovych A, Milostan M, Szajkowski L, Daniluk P, Fidelis K. CASP6 data processing and automatic evaluation at the protein structure prediction center. Proteins. 2005;61 Suppl 7:19-23. (PubMed)
  3. Kryshtafovych A, Prlic A, Dmytriv Z, Daniluk P, Milostan M, Eyrich V, Hubbard T, Fidelis K. New tools and expanded data analysis capabilities at the protein structure prediction center. Proteins. 2007 Aug 17. (PubMed)
  4. Strömbergsson H, Daniluk P, Kryshtafovych A, Fidelis K, Wikberg JE, Kleywegt GJ, Hvidsten TR. Interaction Model Based on Local Protein Substructures Generalizes to the Entire Structural Enzyme-Ligand Space. J Chem Inf Model. 2008 Oct 21. (PubMed)
  5. Björkholm P, Daniluk P, Kryshtafovych A, Fidelis K, Andersson R, Hvidsten TR. Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts. 2009 Mar 16. (PubMed)

Wybrane prezentacje:

  1. “Lokalne deskryptory struktur bialkowych. Wprowadzenie teoretyczne oraz zastosowania do analizy i przewidywania struktury”, Seminarium z fizyki biologicznej Instytutu Biochemii i Biofizyki PAN, Instytutu Fizyki PAN i Zakladu Biofizyki UW, 12 marca 2007 (Flash, ODP)
  2. “Local Descriptors of Protein Structure: Definition, methods, applications”, Seminar, The Linnaeus Centre for Bioinformatics, 23 Oct 2008 (Flash, ODP)
  3. “A novel method of comparing protein structures using descriptors of local structure”, The First Convention of the Polish Bioinformatics Society, 4 Oct 2008 (PDF)

Postery i abstrakty:

  1. Kryshtafovych, A, Hvidsten, TR, Komorowski, J, Daniluk, P, Wilczynska, M and Fidelis, K. Automated local structure based classification of protein folds. Pacific Symposium on Biocomputing, HI, USA, January 2-7, 2003, p. 98. (PDF)
  2. Daniluk, P, Kryshtafovych, A, Hvidsten, TR, Komorowski, J & Fidelis, K. Identifying Structural Similarity of Proteins Using Local Descriptors of Protein Structure. Pac. Symp. Biocomput., HI, USA, January, 2004, p.61. (PDF)
  3. Daniluk, P, Szajkowski, L, Kryshtafovych, A, and Fidelis, K. Identifying model-target similarity using local descriptors of protein structure. Sixth Meeting on the Critical Assessment of Protein Structure Prediction, Gaeta, Italy, December, 2004, p.162-163. (PDF)
  4. Hvidsten, TR, Kryshtafovych, A, Daniluk, P, Fidelis, K and Komorowski, J. Prediction of protein function using local descriptors of protein structure. Seventh Meeting on the Critical Assessment of Protein Structure Prediction, Pacific Grove, CA, USA, December, 2006, p.67-68. (PDF)
  5. Björkholm, P, Daniluk, P, Kryshtafovych, A, Fidelis K, Andersson, R and Hvidsten, TR. Predicting residue-residue contacts using hidden Markov models trained on local neighborhoods of protein structure. Eight Meeting on the Critical Assessment of Protein Structure Prediction, Cagliari, Italy, December, 2008, p.54-55. (PDF)

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